First, I cloned the Mac partition with CarbonCopyCloner to clone the Lion installation and then I used WinClone for the Bootcamp partition under Lion. Everything worked perfectly.

How to Clone Your Hard Disk to an SSD Using Clonezilla Clonezilla is free and is OS-independent drive cloning software.

Is there some nuance to cloning encrypted disks I am missing? My only guess at the moment is maybe if I boot from a live disk and copy the disks that way, that way the source SSD remains locked.

Winclone is designed to help everyone who uses dual boot Macs with Boot Camp more easily create snapshots, clone partitions or migrate Boot Camp systems and more. New in Winclone 5 is Winclone Backup, ...

Installing Windows 10 on a Mac that sports a Fusion Drive, Apple's branding for hybrid SSD/HDD systems, creates the Windows partition on the mechanical drive.